Genome-wide prediction of transcription start site in four conifer species : доклад, тезисы доклада


Тип публикации: доклад, тезисы доклада, статья из сборника материалов конференций

Конференция: BGRS/SB-2020. The 12th International Multiconference; Novosibirsk; Novosibirsk

Год издания: 2020

Идентификатор DOI: 10.18699/BGRS/SB-2020-188

Ключевые слова: plant promoters, conifer genome, GC3 biology, 5'-UTR

Аннотация: Current draft annotations for sequenced conifer genomes are preliminary and limited, but provide opportunities for further structural and functional analysis. We attempted to improve the existing genome annotations by marking 5'-UTRs in the four conifer species Pinus taeda, Picea glauca, Picea abies and Larix sibirica. Prediction oПоказать полностьюf transcription start sites (TSS) was performed on the promoter sequences of genes with RNA or protein support using TSS prediction program TSSPlant. The distribution of 5'-UTR lengths from the annotations of several model plants was used to select the best prediction per gene. Frequency of TATA(A/T)A(A/T) motif in the predicted TSS-centered promoter regions showed a pronounced peak around 60 bp upstream of TSS.

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Номера страниц: 300-301

Издатель: Institute of Cytology and Genetics, SB RAS


  • Bondar Eugeniia I. (Laboratory of Genomeic Research and Biotechnology FRC KSC SB RAS)
  • Sharov Vadim V. (Department of High Performance Computing Siberian Federal University)
  • Kuzmin Dmitry A. (Department of High Performance Computing Siberian Federal University)
  • Tatarinova Tatiana V. (Bioinformatics Center of IITP RAS)
  • Krutovsky Konstantin V. (Laboratory of Forest Genomics Siberian Federal University; Department of Forest Genetics and Forest Tree Breeding Georg-August University of Göttingen; Laboratory of Population Genetics Vavilov Institute of General Genetics; Department of Ecosystem Science and Management Texas A&M University College Station)

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