Unsupervised Classification of Some Bacteria with 16S RNA Genes

Описание

Тип публикации: доклад, тезисы доклада, статья из сборника материалов конференций

Конференция: 9th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2022

Год издания: 2022

Идентификатор DOI: 10.1007/978-3-031-07704-3_17

Ключевые слова: clustering, elastic map, structure, triplet frequency

Аннотация: We used unsupervised nonlinear clustering to reveal the interplay between structure of nucleotide sequences and the taxonomy of their bearers. Triplet frequency composition is referred to a structure, and taxonomy is determined through standard morphology and physiology of bacteria. Soft 16 × 16 elastic map has been used for clusteПоказать полностьюring. Some preliminary results are presented here approving the high efficiency of such approach to phylogeny analysis. Further applications to medicine are discussed. © 2022, Springer Nature Switzerland AG.

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Издание

Журнал: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Выпуск журнала: Vol. 13346 LNBI

Номера страниц: 205-215

ISSN журнала: 03029743

Издатель: Springer Science and Business Media Deutschland GmbH

Персоны

  • Teterleva A. (School of Fundamental Biology and Biotechnology of Siberian Federal University, Krasnoyarsk, Russian Federation)
  • Abramov V. (Federal Siberian Research and Clinical Center of FMBA of Russia, Krasnoyarsk, Russian Federation)
  • Morgun A. (Krasnoyarsk State Medical University named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russian Federation)
  • Larionova I. (Krasnoyarsk State Medical University named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russian Federation)
  • Sadovsky M. (Institute of Computational Modelling of the Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, Russian Federation, Krasnoyarsk State Medical University named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russian Federation, Federal Siberian Research and Clinical Center of FMBA of Russia, Krasnoyarsk, Russian Federation)

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