Тип публикации: доклад, тезисы доклада, статья из сборника материалов конференций

Конференция: International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2018; Granada, Spain; Granada, Spain

Год издания: 2018

Идентификатор DOI: 10.1007/978-3-319-78723-7_16

Ключевые слова: K-means, Order, Probability, Projection, Symmetry, Triplet

Аннотация: Chloroplast genomes have eight-cluster structuredness, in triplet frequency space. Small fragments of a genome converted into a triplet frequency dictionaries are the elements to be clustered. Typical structure consists of eight clusters: six of them correspond to three different positions of a reading frame shifted for 0, 1 and 2 Показать полностьюnucleotides (in two opposing strands), the seventh cluster corresponds to a junk regions of a genome, and the eighth cluster is comprised by the fragments with excessive GC-content bearing specific RNA genes. The structure exhibits a specific symmetry. © 2018, Springer International Publishing AG, part of Springer Nature.

Журнал: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Выпуск журнала: Vol. 10813 LNBI

Номера страниц: 186-196

ISSN журнала: 00213089

• Sadovsky M. (Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny Prospect, 79, Krasnoyarsk, Russian Federation)
• Senashova M. (Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation)
• Malyshev A. (Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation)

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